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Latest Printed Issue
2010, 55 Num.9
Online: 2010-03-20

Protein-protein interactions and recognition play a pivotal role in molecular biology. Molecular docking technology is an approach on protein-protein interaction and recognition. In the mechanism study and docking prediction of protein-protein interactions, the protein topology is often found important. Since the network tools can be used to take account of the global topological characteristics of the protein-protein complex, this method makes it easy to explain the structure mechanisms of protein-protein interactions. The three-dimensional structure of a protein can be treated as a complex network composed of residues. The front cover shows the three-dimensional structures of protein complex and the corresponding residue network representations. In the docking process, many complex structures will be produced, and the few correct docked complex conformations have different structures from those incorrect ones. Due to the characteristic complementarity of the complex interfaces, protein-protein docking can be viewed as a particular network rewiring. It is found that these networks of correct docked complex conformations have much more increase sum of the interface degree values and decay of characteristic path length than those of the incorrect ones. These network properties may help us to discriminate near-native structure from the incorrect ones and provide some insight into the future development of the scoring functions on protein-protein complex (see the article by CHANG Shan et al. on page 814).


LETTERS
ARTICLES
LETTERS
 
LETTERS
787 YAO ZhengQuan, XIAO GuoQiao, LIANG MeiYan
Global cooling controls on the chemical weathering as evidenced from the Plio-Pleistocene deposits of the North China Plain
2010,55: 787-790 [Abstract] ( 17 ) [HTML 1KB] [PDF 579KB] ( 16 )
 
ARTICLES
791 PENG QingYu, FAN LiangYan
Accurate determination of the plate model based on CCD images with different orientations
2010,55: 791-796 [Abstract] ( 15 ) [HTML 1KB] [PDF 724KB] ( 17 )
797 ZHANG XiaoRui, YUAN ZhangFu, ZHAO HongXin, ZANG LiKun, LI JianQiang
Wetting behavior and interfacial characteristic of Sn-Ag-Cu solder alloy on Cu substrate
2010,55: 797-801 [Abstract] ( 12 ) [HTML 1KB] [PDF 836KB] ( 14 )
802 SHAO XiaoLing, MA Jun, WEN Gang, YANG JingJing
Oxidation of estrone by permanganate: Reaction kinetics and estrogenicity removal
2010,55: 802-808 [Abstract] ( 15 ) [HTML 1KB] [PDF 595KB] ( 11 )
809 BAO Han, ZHANG ChunXi, REN YaNan, ZHAO JingQuan
Methanol as a probe to investigate the relationship between the secondary electron donor TyrZ and the substrate water molecules in active photosystem II
2010,55: 809-813 [Abstract] ( 12 ) [HTML 1KB] [PDF 557KB] ( 10 )
814 CHANG Shan, GONG XinQi, JIAO Xiong, LI ChunHua, CHEN WeiZu,WANG CunXin
Network analysis of protein-protein interaction
2010,55: 814-822 [Abstract] ( 15 ) [HTML 1KB] [PDF 839KB] ( 11 )
823 CAI HongMei, XIAO JingHua, ZHANG QiFa, LIAN XingMing
Co-suppressed glutamine synthetase2 gene modifies nitrogen metabolism and plant growth in rice
2010,55: 823-833 [Abstract] ( 11 ) [HTML 1KB] [PDF 3268KB] ( 15 )
834 WU YongHua, XIA Lin, ZHANG Qian, LEI FuMin, YANG QiSen
Genetic diversity in the male-specific SRY gene of Lepus yarkandensis
2010,55: 834-840 [Abstract] ( 13 ) [HTML 1KB] [PDF 731KB] ( 9 )
841 RAN YongKang, SHI Xiang, WANG Hu, CHEN LiChun, CHEN Jie, LIU RuiChun, GONG Huiling
The maximum coseismic vertical surface displacement and surface deformation pattern accompanying the Ms 8.0 Wenchuan earthquake
2010,55: 841-850 [Abstract] ( 15 ) [HTML 1KB] [PDF 1406KB] ( 10 )
851 LE GuiMing, TANG YuHua, ZHENG Liang, LIU LianGuang
An analysis of interplanetary sources of geomagnetic storm during November 7–8, 1998
2010,55: 851-856 [Abstract] ( 14 ) [HTML 1KB] [PDF 754KB] ( 8 )
857 WANG Hui, MA ShuYing, RIDLEY A J
Comparative study of a substorm event by satellite observation and model simulation
2010,55: 857-864 [Abstract] ( 10 ) [HTML 1KB] [PDF 961KB] ( 9 )
865 HU YaMin, DING YiHui, LIAO Fei
An improvement on summer regional climate simulation over East China: Importance of data assimilation of soil moisture
2010,55: 865-871 [Abstract] ( 9 ) [HTML 1KB] [PDF 1004KB] ( 11 )
872 ZHAO ZhongKuo, QIE XiuShu, ZHANG TingLong, ZHANG Tong, ZHANG HongFa, WANG Yong, SHE Yong, SUN BaoLai, WANG HuaiBin
Electric field soundings and the charge structure within an isolated thunderstorm
2010,55: 872-876 [Abstract] ( 13 ) [HTML 1KB] [PDF 861KB] ( 9 )
877 ZHANG DongShi, CHEN Feng*, LIU HeWei, WANG XianHua, DU Kai, SI JinHai, HOU Xun
Research on the technology of femtosecond laser micromachining based on image edge tracing
2010,55: 877-881 [Abstract] ( 12 ) [HTML 1KB] [PDF 601KB] ( 10 )
882 ZHENG JianJun, ZHANG ZhiYuan, HUANG ZuoHua, HU ErJiang, TANG ChengLong, WANG JinHua
Numerical study on combustion of diluted methanol-air premixed mixtures
2010,55: 882-889 [Abstract] ( 11 ) [HTML 1KB] [PDF 772KB] ( 10 )
890 ZHANG Cheng, YANG Jing, XU Jin, ZHAO DongMing
A DNA length reducing computing model for maximum independent set problem
2010,55: 890-896 [Abstract] ( 11 ) [HTML 1KB] [PDF 1036KB] ( 11 )
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